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The Institute of Medical Sciences

Publications

Publications

A selection of recent publications that include work done by Aberdeen Proteomics:

  • de Assis L, Bain J, Liddle C, Leaves I, Hacker C, Peres da Silva R, Yuecel R, Bebes A, Stead D, Childers D, Pradhan A, Mackenzie K, Lagree K, Larcombe D, Ma Q, Avelar G, Netea M, Erwig L, Mitchell A, Brown G, Gow N, Brown A (2022). The nature of β-1,3-glucan exposing features on the Candida albicans cell wall and their modulation. mBio, 13(6), [e02605-22].

  • De Cesare GB, Hafez A, Stead D, Llorens C, Munro CA*(2022). Biomarkers of caspofungin resistance in Candida albicans isolates: A proteomic approach. Virulence 13, 1005-1018.

  • Bakke FK, Gundappa MK, Matz H, Stead DA, Macqueen DJ, Dooley H (2022). Exploration of the nurse shark (Ginglymostoma cirratum) plasma immunoproteome using high-resolution LC-MS/MS. Front Immunol 13, 873390.

  • Bakke FK, Monte MM, Stead DA, Causey DR, Douglas A, Macqueen DJ, Dooley H (2020). Plasma proteome responses in salmonid fish following immunization. Front Immunol 11, 581070.

  • Alessi AM, Gray V, Farquharson FM, Flores-López A, Shaw S, Stead D, Wegmann U, Shearman C, Gasson M, Collie-Duguid ESR, Flint HJ, Louis P (2020). β-glucan is a major growth substrate for human gut bacteria related to Coprococcus eutactus. Environ Microbiol 22: 2150-2164.

  • Johansson HKL, Svingen T, Boberg J, Fowler PA, Stead D, Vinggaard AM, Filis P (2020). Calretinin is a novel candidate marker for adverse ovarian effects of early life exposure to mixtures of endocrine disruptors in the rat. Arch Toxicol 94, 241-1250.

  • Raikos V, Hayes H, Stead D, Ni H (2019). Angiotensin-converting enzyme (ACE) inhibitory activity of hydrolysates generated from whey protein fortified with salal fruits (Gaultheria shallon) by enzymatic treatment with Pronase from Streptomyces griseus. Int J Food Sci Technol 54:2975-2982.

  • Causey DR, Kim J-H, Stead DA, Martin SAM, Devlin RH & Macqueen DJ (2018). Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth. Journal of Proteomics, 192, 114-124.

  • Causey D, Pohl M, Stead D, Martin SAM, Secombes CJ & MacQueen D (2018). High-throughput proteomic profiling of the fish liver following bacterial infection. BMC Genomics 19, 719.

  • Herrero-de-Dios C, Day AM, Tillmann AT, Kastora SL, Stead D, Salgado PS, Quinn J, Brown AJP (2018). Redox regulation, rather than stress-induced phosphorylation, of a Hog1 MAP kinase modulates its nitrosative stress-specific outputs. mBio 9, e02229-17.

  • Mente E, Pierce GJ, Antonopoulou E, Stead D, Martin S (2017). Postprandial hepatic protein expression in trout Oncorhynchus mykiss, a proteomics examination. Biochemistry and Biophysics Reports 9, 79-84.

  • Abbott FK, Milne KEN, Stead DA, Gould IM (2016). Combination antimicrobial susceptibility testing of Burkholderia cepacia complex: significance of species. Int J Antimicrob Agents 48(5), 521-527.

  • Childers DS, Raziunaite I, Mol Avelar G, Mackie J, Budge S, Stead D, Gow NAR, Lenardon MD, Ballou ER, MacCallum DM, Brown AJP (2016). The rewiring of ubiquitination targets in a pathogenic yeast promotes metabolic flexibility, host colonization and virulence. PLoS Pathogens 12(4), e1005566. doi:10.1371/journal.ppat.1005566.

  • Lea RG, Amezaga MR, Loup B, Mandon-Pépin B, Stefansdottir A, Filis P, Kyle C, Zhang Z, Allen C, Purdie L, Jouneau L, Cotinot C, Rhind SM, Sinclair KD, Fowler PA (2016). The fetal ovary exhibits temporal sensitivity to a ‘real-life’ mixture of environmental chemicals. Sci Rep 6, 22279.

  • Huuskonen P, Amezaga MR, Bellingham M, Jones LH, Storvik M, Häkkinen M, Keski-Nisula L, Heinonen S, O'Shaughnessy PJ, Fowler PA, Pasanen M (2016). The human placental proteome is affected by maternal smoking. Reproductive Toxicology 63, 22–31.

  • Krogenæs AK, Ropstad E, Gutleb AC, Hårdnes N, Berg V, Dahl E, Fowler PA (2014). In utero exposure to environmentally relevant concentrations of PCB 153 and PCB 118 disrupts fetal testis development in sheep. J Toxicol Environ Health A 77(9-11), 628-49.

  • Al-Gubory KH, Arianmanesh M, Garrel C, Bhattacharya S, Cash P, Fowler PA (2014). Proteomic analysis of the sheep caruncular and intercaruncular endometrium reveals changes in functional proteins crucial for the establishment of pregnancy. Reproduction 147, 599-614.

  • Houssen WE, Bent AF, McEwan AR, Pieiller N, Tabudravu J, Koehnke J, Mann G, Adaba RI, Thomas L, Hawas UW, Liu H, Schwarz-Linek U, Smith MCM, Naismith JH, Jaspars M (2014). An efficient method for the in vitro production of azol(in)e-based cyclic peptides. Angew Chem Int Ed 53, 14171 –14174.

  • Potrykus J, Stead D, MacCallum DM, Urgast DS, Raab A, van Rooijen N, Feldmann J, Brown AJP (2013). Fungal iron availability during deep seated candidiasis is defined by a complex interplay involving systemic and local events. PLoS Pathogens 9(10), e1003676.

  • Kubota T, Stead DA, Hiraga S, ten Have S, Donaldson AD (2012). Quantitative proteomic analysis of yeast DNA replication proteins. Methods 57(2), 196-202.

  • Sandai D, Yin Z, Selway L, Stead D, Walker J, Leach MD, Bohovych I, Ene IV, Kastora S, Budge S, Munro CA, Odds FC, Gow NAR, Brown AJP (2012). The evolutionary rewiring of ubiquitination targets has reprogrammed the regulation of carbon assimilation in the pathogenic yeast Candida albicans. mBio 3(6), e00495-12.

  • Alhaider AA, Bayoumi N, Argo E, Abdel Gader AM, Stead DA (2012). Survey of the camel urinary proteome by shotgun proteomics using a multiple database search strategy. Proteomics 12, 3403-3406.

  • Thomas L, Hodgson DA, Wentzel A, Nieselt K, Ellingsen TE, Moore J, Morrissey ER, Legaie R; STREAM Consortium, Wohlleben W, Rodríguez-García A, Martín JF, Burroughs NJ, Wellington EM, Smith MC (2012). Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture. Mol Cell Proteomics 11(2), M111.013797. Epub 2011 Dec 6.