Professor Marcel Jaspars
FRSE, FRSC, CChem, BA Hons (Cantab), PhD (Dublin), ScD (Cantab)
Chair in Chemistry
- Head of the Department of Chemistry, University of Aberdeen 2016-2019
- Scientific Project Leader of the EU FP7 Project ‘PharmaSea’ (€ 9.5 M, 24 partners from 14 countries) 2012-2017
- Visiting Professor for Senior International Scientists of the Chinese Academy of Sciences 2012-2013
- Visiting Professor (20%) at the University of Tromsø, Norway to provide advice for their £14 M marine biodiscovery programme. 2007-2017
- Sabbatical at the Australian Institute of Marine Science, 2004
- Professor of Organic Chemistry, University of Aberdeen, 2003-
- Senior Lecturer in Organic Chemistry, University of Aberdeen, 2000-2003
- Lecturer in Organic Chemistry, University of Aberdeen, 1995-2000
- Post-Doc, Crews Lab, University of California, Santa Cruz, 1993-1995
- Post-Doc, Burgess Lab, Texas A & M University, 1992-1993
- BA Hons (Cantab) Natural Sciences (Chemistry)1987 - University of Cambridge
- PhD Organic Chemistry1992 - Trinity College, DublinElectrophilic Catalysis of the Sakurai Reaction
- ScD (Cantab) Organic Chemistry2018 - University of CambridgeInvestigating the Chemical Structures, Bioactivity and Biosynthesis of Marine and Desert Natural Products
On the scientific advisory board for the EU Horizon 2020 ATLAS Project (Coordinator, Murray Roberts, University of Edinburgh) 2018-
Co-lead of the Deep Sea Genetic Resources Working Group of the Deep Ocean Stewardship Initiative. 2018-
On the Scientific Advisory Board of the Center for Microbial Secondary Metabolites, Danish Technical University, Copenhagen, Denmark 2018-
Management board of NPRONET, a BBSRC network in industrial biotechnology and biosciences. 2014-2018
Governing board member of Industrial Biotechnology Innovation Centre, Strathclyde 2014-2016
Co-author of Blue Paper on the Ocean Genome for the High Level Panel for a Sustainable Ocean Economy 2020
Co-author of study for the United Nations Convention on Biological Diversity on Digital Sequence Information on Genetic Resources: Concept, Scope and Current Use. CBD/DSI/AHTEG/2020/1/3 2020
Special advisor on Marine Genetic Resources to the International Union for the Conservation of Nature at the United Nations process on the Conservation and Sustainable Use of Biodiversity of Areas Beyond National Jurisdiction. 2019-
Member of Royal Society working group writing a policy briefing for the Government Office of Science entitled “Future Ocean Resources: Metal-Rich Minerals and Genetics” Released July 2017.
Chair of advisory panel of policy and legal experts (Part of the PharmaSea EU FP7 consortium lead by Marcel Jaspars 2012-17) bringing together policymakers (United Nations, European Commission) with NGOs (International Union for the Conservation of Nature, Convention on Biodiversity Secretariat, International Seabed Authority) with international marine biotechnology companies and academic and legal/policy experts to shape the policy debate on intellectual property derived from marine genetic resources in areas beyond national jurisdiction (United Nations process on the Conservation and Sustainable Use of Biodiversity of Areas Beyond National Jurisdiction). Contributions recorded on our BBNJ Page and our Song of the Ocean page
UK member of the Marine Biotechnology working group of the European Science Foundation’s Marine Board Marine Biotechnology Working Group to assist in the revision of the White Paper “Marine Biotechnology – A European Strategy” 2009-2010
Prizes and Awards
Biotechnology and Biological Sciences Research Council Research Development Fellow, 2006-2009
American Society of Pharmacognosy Matt Suffness Award for young investigators, 2003
Fellow of the Royal Society of Chemistry, Chartered Chemist
Fellow of the Royal Society of Edinburgh
My research involves the discovery of new compounds with potential pharmaceutical use from marine and desert environments, their structure determination and biosynthesis. Translation of bioactive natural compounds into preclinical evaluation is exemplified by with sponge derived compounds/analogues that have activity in animal models for Alzheimer’s disease or epilepsy or are able to deliver proteins into animal brains to generate a model of Alzheimer’s disease.
Natural Product Structure Determination:
Structural work involves the use of complementary NMR and theoretical methods to solve the relative stereochemistry of complex natural products, particularly the use of NOE data to constrain conformational searches and the comparison of predicted and experimental CD spectra. A combination of analytical and spectroscopic methods was used to define a metal complex present in the extract of a seasquirt, giving insight into its ecological role.
Together with Leo Gross at IBM Research, I started original work on organic structure determination using a combination of spectroscopy and atomic force microscopy (AFM). First we showed how Ångstrom-resolution AFM images may be used to solve the structure of a simple planar molecule and how this process might be generalised. Subsequently we applied the combined methods to an unknown molecule with a NMR silent region (no H atoms). In a book chapter, we propose the developments needed so that AFM may become invaluable in the rapid structure determination of complex organic molecules in the future.
The isolation and structural characterisation of modified cyclic peptides of marine origin was driven by an interest in their chemical structure in solution and their interaction with metal ions. A major problem with these bioactive cyclic compounds was a sustainable supply. In 2004, I worked together with Dr Paul Long at the London School of Pharmacy and scientists from the Australian Institute of Marine Science to effect the first shotgun cloning of the patellamide biosynthetic pathway resulting in low level production of these compounds.
Subsequent collaboration with Professor Jim Naismith at St Andrews succeeded in overexpressing and structurally characterising the main enzymes involved in the biosynthesis of the patellamides and related cyanobactins. Working together, we defined the main proteases involved including the macrocyclase that circularises a linear peptide without inclusion of a signal sequence, thus making it a very exciting prospect for biotechnological application. We have defined a unique enzyme that forms the heterocycles – the first crystal structure of this type of enzyme. Engineering of this enzyme allowed short synthetic peptide sequences to be processed to form heterocycles in the chain. These enzymes are extremely permissive, and natural and non-natural substrates can be processed using them resulting in the formation milligram quantities of complex, modified cyclic peptides. The starting sequences may include non-natural amino acids and even non-amino acid segments such as fatty acids, aromatics and sugars, with a minimum of three residues required for this to work.
Spinout Company - GyreOx Therapeutics
GyreOx uses an automated chemoenzymatic process to design compounds to treat complex diseases to hit ‘undruggable’ targets. The GyreOx combination of computational design, automation and unique engineered enzymes allows them to deliver novel drugs in the chemical space beyond the 'rule of 5'. Focussed library design enables better compound-target interaction and the tuning of important drug properties. No other technology offers GyreOx's degree of flexibility in design and production.
The company was founded in late 2019 together with Prof Jim Naismith at the University of Oxford and Dr Bill Primrose, Entrepreneur, with funding from Innovate UK and other investors.
MARBLES EU Project
Harnessing marine microbes for drug discovery and sustainable production of fish and crops
Protecting the Oceans Using Chemistry
Professor Marcel Jaspars has been advising the UN to develop a new law to protect marine biodiversity. The UN is working to conserve and sustainably use marine biodiversity in areas beyond national jurisdiction – about 60% of the oceans and 40% of the entire planet. The Song of the Oceans brings together science, the arts and humanities to publicise the urgent need to conserve the oceans.
Marcel provided scientific leadership for a large EU FP7 consortium ‘PharmaSea’, running from 2012-2017 with the contribution of 24 partners from 14 countries. Part of this project was to engage with stakeholders, NGOs and policy makers to provide sound scientific advice on major issues affecting the conservation and sustainable use of marine biodiversity. His major role was to translate scientific information and provide options on this topic to senior policy makers at the EU and UN, making visits to Brussels and New York to present information in a digestible format and answer questions, paying particular attention to the legal and policy requirements.
Marcel has been active at national and international levels to develop the science, its applications/industrial uptake and associated policy involved in marine biodiscovery and biotechnology. Since 2014 Marcel has been involved in the BBNJ process, providing scientific input and co-authoring the Mare Geneticum proposal which provides building blocks based on good scientific practice towards a solution for the MGR aspects of the BBNJ process. Also see our work to bring this to a wider audience with our 'Song of the Oceans'.
At EU level he was involved in coordinating the authoring the health section of a European Science Foundation position paper on the Future of Marine Biotechnology informing the blue growth agenda of the European Commission through a number of concrete and measurable recommendations. In 2017 he was a member of the UK Marine Foresight Committee’s Royal Society Working group that wrote a report entitled ‘Future Ocean Resources: Metal-Rich Minerals and Genetics’ on the UN BBNJ issue and he has since provided advice on this topic to the UK’s Foreign and Commonwealth Office. More recently he was a co-author on a report on the Ocean Genome for the High Level Panel for a Sustainable Ocean Economy and a lead author on a study for the United Nations Convention on Biological Diversity on Digital Sequence Information on Genetic Resources: Scope, Concept and Current Use.
Marcel Jaspars speaking at UN HQ in New York as advisor to the International Union for the Conservation of Nature at the Second Intergovernmental Conference on the UN process on the Conservation and Sustainable Use of Biodiversity in Areas Beyond National Jurisdiction
Non-course Teaching Responsibilities
Professor Jaspars is:
Year 3 Coordinator
Erasmus Officer for Chemistry
Coordinator for SX3002 'Science and Society'
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Metabolic Profiling of Inga Species with Antitumor Activity.Molecules, vol. 27, no. 15, 4695Contributions to Journals: Articles
What Should We Mean by ‘Open Access’?Access and Benefit Sharing of Genetic Resources. Lawson, C., Humphries, F., Rourke, M. (eds.). RoutledgeChapters in Books, Reports and Conference Proceedings: Chapters
Inhibition of the Quorum Sensing System, Elastase Production and Biofilm Formation in Pseudomonas aeruginosa by Psammaplin A and BisaprasinMolecules, vol. 27, no. 5, 1721Contributions to Journals: Articles
Bringing access and benefit sharing into the digital agePlants people planet, vol. 4, no. 1, pp. 5-12Contributions to Journals: Articles
Isolation and characterization of new phenolic siderophores with antimicrobial properties from Pseudomonas sp. UIAU-6BBeilstein journal of organic chemistry, vol. 17, pp. 2390-2398Contributions to Journals: Articles
Dermacozine N, the First Natural Linear Pentacyclic Oxazinophenazine with UV–Vis Absorption Maxima in the Near Infrared Region, along with Dermacozines O and P Isolated from the Mariana Trench Sediment Strain Dermacoccus abyssi MT 1.1 TMarine Drugs, vol. 19, no. 6, e325Contributions to Journals: Articles
Marine Genetic Resources in Areas Beyond National Jurisdiction: Promoting Marine Scientific Research and Enabling Equitable Benefit SharingFrontiers in Marine Science, vol. 8, 667274Contributions to Journals: Review articles
Traceability Approaches for Marine Genetic Resources Under the Proposed Ocean (BBNJ) TreatyFrontiers in Marine Science, vol. 8, 661313Contributions to Journals: Articles
Biotechnological and Ecological Potential of Micromonospora provocatoris sp. nov., a Gifted Strain Isolated from the Challenger Deep of the Mariana TrenchMarine Drugs, vol. 19, no. 5, 243Contributions to Journals: Articles
Antiviral drug discovery: preparing for the next pandemicChemical Society Reviews, vol. 50, no. 6, pp. 3647-3655Contributions to Journals: Articles
Combining Intellectual Property, Trade Secrets, Science and an Ecosystem-Focused ApproachMarine Biodiversity of Areas beyond National Jurisdiction. Nordquist, M., Long, R. (eds.). Brill, pp. 97-130, 34 pagesChapters in Books, Reports and Conference Proceedings: Chapters
Iron-meditated fungal starvation by lupine rhizosphere-associated and extremotolerant Streptomyces sp. S29 desferrioxamine productionMolecular Omics, vol. 17, no. 1, pp. 95-107Contributions to Journals: Articles
Unlocking the potential of marine biodiscoveryNatural Product Reports, vol. 38, no. 7, pp. 1235-1242Contributions to Journals: Articles
A tiered approach to the marine genetic resource governance framework under the proposed UNCLOS agreement for biodiversity beyond national jurisdiction (BBNJ)Marine Policy, vol. 122, 103910Contributions to Journals: Articles
Whole genome sequencing of four bacterial strains from South Shetland Trench revealing biosynthetic and environmental adaptation gene clustersMarine Genomics, vol. 54, 100782Contributions to Journals: Articles
Cutting the Gordian knot: early and complete amino acid sequence confirmation of class II lasso peptides by HCD fragmentationThe Journal of antibiotics, vol. 73, pp. 772-779Contributions to Journals: Articles
Antiparasitic Activity of Bromotyrosine Alkaloids and New Analogues Isolated from the Fijian Marine Sponge Aplysinella rhaxChemistry & Biodiversity, vol. 17, no. 10, 2000335Contributions to Journals: Articles
Intellectual Property Rights: Implications for Deep-Ocean StewardshipContributions to Specialist Publications
Novel South African Rare Actinomycete Kribbellaspeibonae Strain SK5: A Prolific Producer of Hydroxamate Siderophores Including New Dehydroxylated CongenersMolecules, vol. 25, no. 13, 2979Contributions to Journals: Articles
A cell-based assay system for activators of the environmental cell stress responseAnalytical Biochemistry, vol. 592, 113583Contributions to Journals: Articles
Whole Genome Sequence of Dermacoccus abyssi MT1.1 Isolated from the Challenger Deep of the Mariana Trench Reveals Phenazine Biosynthesis Locus and Environmental Adaptation FactorsMarine Drugs, vol. 18, no. 3, 131Contributions to Journals: Articles
Structure‐based design, synthesis and bioactivity of a new anti‐TNFα cyclopeptideMolecules, vol. 25, no. 4, 922Contributions to Journals: Articles
Downsizing Class II Lasso Peptides: Genome Mining-Guided Isolation of Huascopeptin Containing the First Gly1-Asp7 MacrocycleJournal of Organic Chemistry, vol. 85, no. 3, pp. 1661-1667Contributions to Journals: Articles
Benefit sharing: combining intellectual property, trade secrets, science and an ecosystem focussed approachWorking Papers and Discussion Papers: Working Papers
Heterologous expression of a cryptic gene cluster from Streptomyces leeuwenhoekii C34T yields a novel lasso peptide, leepeptinApplied and Environmental Microbiology, vol. 85, no. 23, e01752-19Contributions to Journals: Articles
Paenidigyamycin g: 1-acetyl-2,4-dimethyl-3-phenethyl-1H-imidazol-3-iumMolBank, vol. 2019, no. 4, M1094Contributions to Journals: Comments and Debates
Inclusive innovation: Enhancing global participation in and benefit sharing linked to the utilization of marine genetic resources from areas beyond national jurisdictionMarine Policy, vol. 109, 103696Contributions to Journals: Articles
Digyaindoleacid A: 2-(1-(4-hydroxyphenyl)-3-oxobut-1-en-2-yloxy)-3-(1H-indol-3-yl)propanoic acid, a novel indole alkaloidMolBank, vol. 2019, no. 3, pp. 1-10Contributions to Journals: Articles
Amphidinol 22, a New Cytotoxic and Antifungal Amphidinol from the Dinoflagellate Amphidinium carteraeMarine Drugs, vol. 17, no. 7, 385Contributions to Journals: Articles
α-D-glucopyranosyl-(1→2)-[6-O-(L-tryptophanyl)-β-D-fructofuranoside]MolBank, vol. 2019, no. 2, M1066Contributions to Journals: Articles
Making North-South Collaborations Work: Facilitating Natural Product Drug Discovery in AfricaAfrica and the sustainable development goals. Ramutsindela, M., Mickler, D. (eds.). Springer International Publishing AG, pp. 257-266, 10 pagesChapters in Books, Reports and Conference Proceedings: Chapters
Simplified immunosuppressive and neuroprotective agents based on gracilin ANature Chemistry, vol. 11, pp. 342-350Contributions to Journals: Articles
Uncovering the potential of novel micromonosporae isolated from an extreme hyper-arid Atacama Desert soilScientific Reports, vol. 9, 4678Contributions to Journals: Articles
Legonoxamines A-B, two new hydroxamate siderophores from the soil bacterium, Streptomyces sp. MA37Tetrahedron Letters, vol. 60, no. 1, pp. 75-79Contributions to Journals: Articles
LC-HRMS-Database Screening Metrics for Rapid Prioritization of Samples to Accelerate the Discovery of Structurally New Natural ProductsJournal of Natural Products, vol. 82, no. 2, pp. 211-220Contributions to Journals: Articles
Hyphenated LC-ICP-MS/ESI-MS identification of halogenated metabolites in South African marine ascidian extractsSouth African Journal of Chemistry, vol. 71, no. 1, pp. 111-117Contributions to Journals: Articles
Paenidigyamycin A, Potent Antiparasitic Imidazole Alkaloid from the Ghanaian Paenibacillus sp. DE2SHMarine Drugs, vol. 17, no. 1, 9Contributions to Journals: Articles
Antibiotics from Deep-Sea Microorganisms: Current Discoveries and PerspectivesMarine Drugs, vol. 16, no. 10, 355Contributions to Journals: Review articles
Natural product diversity of actinobacteria in the Atacama DesertAntonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, vol. 111, no. 8, pp. 1467-1477Contributions to Journals: Articles
The Cryptococcus neoformans Titan cell is an inducible and regulated morphotype underlying pathogenesisPLoS Pathogens, vol. 14, no. 5, e1006978Contributions to Journals: Articles
Mare Geneticum: Balancing Governance of Marine Genetic Resources in International WatersInternational Journal of Marine and Coastal Law, vol. 33, no. 1, pp. 3-33Contributions to Journals: Articles
Asenjonamides A-C, antibacterial metabolites isolated from Streptomyces asenjonii strain KNN 42.f from an extreme-hyper arid Atacama Desert soilThe Journal of antibiotics, vol. 71, pp. 425-431Contributions to Journals: Articles
Zebrafish-Based Discovery of Antiseizure Compounds from the Red Sea: Pseurotin A2 and Azaspirofuran AACS Chemical Neuroscience, vol. 9, no. 7, pp. 1652-1662Contributions to Journals: Articles
Cyclic Peptides – A Look to the FutureCyclic Peptides. Koehnke, J., Naismith, J., van der Donk, W. A. (eds.). Royal Society of Chemistry (Great Britain), pp. 340-373, 34 pagesChapters in Books, Reports and Conference Proceedings: Chapters
Bypassing the proline/thiazoline requirement of the macrocyclase PatGChemical Communications, vol. 53, no. 91, pp. 12274-12277Contributions to Journals: Articles
Cyclic peptide production using a macrocyclase with enhanced substrate promiscuity and relaxed recognition determinantsChemical Communications, vol. 53, no. 77, pp. 10656-10659Contributions to Journals: Articles
Dual Induction of New Microbial Secondary Metabolites by Fungal Bacterial Co-cultivationFrontiers in Microbiology, vol. 8, pp. 1-10Contributions to Journals: Articles
Targeted Dereplication of Microbial Natural Products by High-Resolution MS and Predicted LC Retention TimeJournal of Natural Products, vol. 80, no. 5, pp. 1370-1377Contributions to Journals: Articles
A Blind Test of Computational Technique for Predicting the Likelihood of Peptide Sequences to CyclizeThe Journal of Physical Chemistry Letters, vol. 8, no. 10, pp. 2310-2315Contributions to Journals: Articles
Pseudochelin A, a siderophore of Pseudoalteromonas piscicida S2040Tetrahedron, vol. 73, no. 18, pp. 2633-2637Contributions to Journals: Articles