Publications | The School of Biological Sciences

Gene gain and loss drive the diversification of gig immune genes in teleosts: structural and regulatory insights from Atlantic salmon

2026

Manousi, D., Naseer, S., Martin, S., Sandve, S., Saitou, M.

Fish & Shellfish Immunology, vol. 168, 110975

Contributions to Journals: Articles

Online: https://www.sciencedirect.com/science/article/pii/S1050464825008642
Digital Object Identifier: https://doi.org/10.1016/j.fsi.2025.110975
Open Access: http://aura.abdn.ac.uk/bitstreams/6d64215c-041d-4eec-832d-c66fe9b53402/download

Genomic regulatory landscape underlying the antiviral response of Atlantic salmon

2025 - E-pub ahead of print

Naseer, S., Clark, T. C., Collet, B., Dewari, P., Baranasic, D., Macqueen, D. J., Boudinot, P., Martin, S. A. M.

Genome Research

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1101/gr.280579.125

Characterisation of post-translational and transcriptional reprogramming of the immune response to ISAV and IPNV infections in salmon head kidney cells

2025

Stewart, R. D., Guitián, X. S., Gervais, O., Jin, Y., Salisbury, S. J., Ballantyne, M., Martin, S. A. M., Orosa-Puente, B., Robledo, D.

Frontiers in Immunology, vol. 16, 1532917

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.3389/fimmu.2025.1532917
Open Access: http://aura.abdn.ac.uk/bitstreams/581ed911-9088-4902-a337-3b0bf6a7a6ca/download

Preliminary Investigation Into the Appropriateness of Control Measures and Harvest Control Rules for a Data‐Limited, Sex‐Changing Fish Managed by Harvest Slot Limits

2025

Pritchard, C. J., Treasurer, J., Highway, A., Salama, N., Berrill, I., Martin, S., Marshall, C. T.

Aquaculture, Fish and Fisheries, vol. 5, no. 4, e70091

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1002/aff2.70091
Open Access: http://aura.abdn.ac.uk/bitstreams/b2e66705-da47-4a77-a1d6-c56fce228f09/download

Cell death is a conserved innate disease response of brown algae against the oomycete Eurychasma dicksonii

2025 - E-pub ahead of print

Gachon, C. M. M., Müller, D. G., Strittmatter, M., Murua, P., Beckmann, M. J., Tsirigoti, A., Wawra, S., Katsaros, C. I., van West, P., Kuepper, F.

iScience, 113195

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.isci.2025.113195

Dissecting the genetic basis of response to salmonid alphavirus in Atlantic salmon

2025

Manousi, D., Jaskula, D. M., Grammes, F., Knutsen, T. M., Naseer, S., Martin, S. A., Moen, T., Saitou, M., Lien, S.

BMC Genomics, vol. 26, no. 1, 657

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1186/s12864-025-11735-2
Open Access: http://aura.abdn.ac.uk/bitstreams/52a9c97b-0a8b-4b3d-a896-59aea9a2fd51/download
Additional Links: View publication in Scopus

Microbial and histopathological insights into gill health of Atlantic salmon ( Salmo salar ) across Scottish aquaculture sites

2025

Costelloe, E. P., Lorgen-Ritchie, M., Krol, E., Noguera, P., Bickerdike, R., Tinsley, J., Valdenegro, V., Douglas, A., Martin, S. A.

Aquaculture, vol. 599, 742166

Contributions to Journals: Articles

Online: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1085241
Digital Object Identifier: https://doi.org/10.1016/j.aquaculture.2025.742166
Open Access: http://aura.abdn.ac.uk/bitstreams/43f616b6-ad03-4c61-ad11-a02a7ff70802/download

Investigating the relative vulnerability of a temperate coastal fish community to a live wrasse pot fishery

2025

Pritchard, C. J., Salama, N. K., Berrill, I., Martin, S. A., Marshall, C. T.

Fisheries Research, vol. 284, 107327

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.fishres.2025.107327
Open Access: http://aura.abdn.ac.uk/bitstreams/88134652-d26b-40e5-92d7-c49bb406ee21/download

Aligning fishing gear selectivity with harvest slot limits for ballan wrasse Labrus bergylta

2025

Pritchard, C., Stendal, M. M. .. R., Halvorsen, K. T., Stewart, L., Salama, N., Berrill, I., Martin, S. A. M., Marshall, C. T.

Aquaculture, Fish and Fisheries, vol. 5, no. 1, e70044

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1002/aff2.70044
Open Access: http://aura.abdn.ac.uk/bitstreams/6816f998-2ab0-4be2-be76-2af1331a6268/download

Omics approaches in fish nutrition research

2025

Martin, S., Porter, D., Mente, E., Casu, F., Watson, A.

Feed and Feeding for Fish and Shellfish: Nutritional Management. Kumar, V. (ed.). Academic Press, pp. 639-668, 30 pages

Chapters in Books, Reports and Conference Proceedings: Chapters

Digital Object Identifier: https://doi.org/10.1016/B978-0-443-21556-8.00014-4

Association of microbial community structure with gill disease in marine-stage farmed Atlantic salmon (Salmo salar);: a yearlong study

2024

Clinton, M., Wyness, A. J., Martin, S. A., Brierley, A. S., Ferrier, D. E.

BMC Veterinary Research, vol. 20, 340

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1186/s12917-024-04125-5
Open Access: http://aura.abdn.ac.uk/bitstreams/2f32009e-fea7-41cc-869a-05f8bcaacdf5/download
Additional Links: View publication in Scopus

Saprolegnia parasitica

2024

Apostolakis, K., Secombes, C. J., van West, P.

Fish Parasites: A Handbook of Protocols for their Isolation, Culture and Transmission. CABI International, pp. 390-401, 12 pages

Chapters in Books, Reports and Conference Proceedings: Chapters

Digital Object Identifier: https://doi.org/10.1079/9781800629127.0026
Additional Links: View publication in Scopus

Diseases of marine fish and shellfish in an age of rapid climate change

2024

Rowley, A. f., Baker-Austin, C., Boerlage, A. s., Caillon, C., Davies, C. e., Duperret, L., Martin, S. a., Mitta, G., Pernet, F., Pratoomyot, J., Shields, J. d., Shinn, A. p., Songsungthong, W., Srijuntongsiri, G., Sritunyalucksana, K., Vidal-Dupiol, J., Uren webster, T. m., Taengchaiyaphum, S., Wongwaradechkul, R., Coates, C. j.

iScience, vol. 27, no. 9, 110838

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.isci.2024.110838
Open Access: http://aura.abdn.ac.uk/bitstreams/dc348b64-a98a-4c91-84b1-cd27fdd93eb3/download

Rediscovery of the rare Cladochroa chnoosporiformis Skottsberg from the Falkland Islands and its merger with Utriculidium durvillei Skottsberg

2024 - E-pub ahead of print

Mystikou, A., Asensi, A. O., Peters, A. F., Kytinou, E., Amin, S., Brickle, P., van West, P., Kuepper, F.

Botanica Marina

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1515/bot-2023-0044
Open Access: http://aura.abdn.ac.uk/bitstreams/7bde4952-8416-4581-a05d-0e2f89d825be/download
Additional Links: https://core.ac.uk/works/162013320/

Dynamics of Gill Responses to a Natural Infection with Neoparamoeba perurans in Farmed Tasmanian Atlantic Salmon

2024

Vallarino, M. C., Dagen, S. L., Costelloe, E., Oyenekan, S. I., Tinsley, J., Valdenegro, V., Król, E., Noguera, P., Martin, S. A. M.

Animals, vol. 14, no. 16, 2356

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.3390/ani14162356
Open Access: http://aura.abdn.ac.uk/bitstreams/ad951e68-1418-401e-8078-fcc7278b6647/download

Modulation of metabolic and immunoregulatory pathways in the gut transcriptome of Atlantic Salmon (Salmo salar L.) after early nutritional programming during first feeding with plant-based diet

2024

Tawfik, M., Betancor, M. B., McMillan, S., Norambuena, F., Tocher, D., Douglas, A., Martin, S.

Frontiers in Immunology, vol. 15, 1412821

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.3389/fimmu.2024.1412821
Open Access: http://aura.abdn.ac.uk/bitstreams/74068f7a-fa10-4545-9430-022ffbcd8e1f/download
Additional Links: View publication in Scopus

Impact of freshwater rearing history on Atlantic salmon gill response to viral stimulation post seawater transfer

2024

Lorgen-Ritchie, M., Chalmers, L., Clarkson, M., Taylor, J. F., MacKenzie, S., Migaud, H., Martin, S.

Fish and Shellfish Immunology, vol. 150, 109653

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.fsi.2024.109653
Open Access: http://aura.abdn.ac.uk/bitstreams/1353e428-48d9-4b8b-9d4d-ea7f32b259dc/download

Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages

2024

Tawfik, M. M., Lorgen-Ritchie, M., Krol, E., McMillan, S., Norambuena, F., Bolnick, D. I., Douglas, A., Tocher, D. R., Betancor, M. B., Martin, S.

Animal Microbiome, vol. 6, 38

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1186/s42523-024-00321-8
Open Access: http://aura.abdn.ac.uk/bitstreams/f2276672-47aa-4499-a06b-83426da77b93/download

Evaluation of the efficacy of MONTANIDE™ GR01, a new adjuvant for feed-based vaccines, on the immune response and protection against Streptococcus agalactiae in oral vaccinated Nile tilapia (Oreochromis niloticus) under laboratory and on-farm conditions

2024

Pholchamat, S., Vialle, R., Luang-In, V., Phadee, P., Wang, B., Wang, T., Secombes, C. J., Wangkahart, E.

Fish & Shellfish Immunology, vol. 149, 109567

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.fsi.2024.109567

Macroalgal eukaryotic microbiome composition indicates novel phylogenetic diversity and broad host spectrum of oomycete pathogens

2024

Timanikova, N., Fletcher, K., Han, J., van West, P., Woodward, S., Kim, G., Kuepper, F., Wenzel, M.

Environmental Microbiology, vol. 26, no. 6, e16656

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1111/1462-2920.16656
Open Access: http://aura.abdn.ac.uk/bitstreams/5f30b0d2-4df0-461b-b992-eb43e8b2ba10/download
Additional Links: View publication in Scopus

Can nutritional programming in Atlantic salmon (Salmo salar) be optimised with a reduced stimulus period?

2024

McMillan, S., Martin, S. A., Król, E., Norambuena, F., Baumgärtner, S., Gong, X., Tawfik, M. M., Glencross, B., Taylor, J. F., Tocher, D. R., Betancor, M. B.

Aquaculture, vol. 585, 740686

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.aquaculture.2024.740686
Open Access: http://aura.abdn.ac.uk/bitstreams/913c771e-3f21-41c6-b091-defc194496c9/download
Additional Links: View publication in Scopus

Mapping the cellular landscape of Atlantic salmon head kidney by single cell and single nucleus transcriptomics

2024

Andresen, A. M. S., Taylor, R. S., Grimholt, U., Daniels, R. R., Sun, J., Dobie, R., Henderson, N. C., Martin, S. A. M., Macqueen, D. J., Fosse, J. H.

Fish & Shellfish Immunology, vol. 146, 109357

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.fsi.2024.109357
Open Access: http://aura.abdn.ac.uk/bitstreams/ebf2cdc3-92fb-42ed-b0de-78a663897d88/download

Cell atlas of the Atlantic salmon spleen reveals immune cell heterogeneity and cell-specific responses to bacterial infection

2024

Sun, J., Ruiz Daniels, R., Balic, A., Andresen, A. M. S., Bjørgen, H., Dobie, R., Henderson, N. C., Koppang, E. O., Martin, S. A. M., Fosse, J. H., Taylor, R. S., Macqueen, D. J.

Fish & Shellfish Immunology, vol. 145, pp. 109358

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.1016/j.fsi.2024.109358
Open Access: http://aura.abdn.ac.uk/bitstreams/e504e663-bb7a-4f66-b489-96bfe1256767/download

Specific Phylotypes of Saprolegnia parasitica Associated with Atlantic Salmon Freshwater Aquaculture

2024

Shreves, K., Saraiva, M., Ruba, T., Miller, C., Scott, M., McLaggan, D., van West, P.

Journal of Fungi, vol. 10, no. 1, 57

Contributions to Journals: Articles

Digital Object Identifier: https://doi.org/10.3390/jof10010057
Open Access: http://aura.abdn.ac.uk/bitstreams/51b01755-9bab-49e8-8634-bee4606b7712/download

Advancements, deficiencies, and future necessities of studying Saprolegniales: A semi-quantitative review of 1073 published papers

2023

Masigol, H., van West, P., Taheri, S. R., Fregeneda-Grandes, J. M., Pârvulescu, L., McLaggan, D., Bliss, T. T., Mostowfizadeh-Ghalamfarsa, R., Pourmoghaddam, M. J., Grossart, H. P.

Fungal Biology Reviews, vol. 46, 100319

Contributions to Journals: Review articles

Digital Object Identifier: https://doi.org/10.1016/j.fbr.2023.100319
Open Access: http://aura.abdn.ac.uk/bitstreams/fceb8ffc-1c5b-4030-acc7-90aeac2d1f57/download
Additional Links: View publication in Scopus