Senior Research Fellow
- About
-
- Email Address
- p.louis@abdn.ac.uk
- Telephone Number
- +44 (0)1224 438735
- Office Address
Dr. Petra Louis
Microbiology Group
Gut Health Theme
The Rowett Institute
University of Aberdeen
Foresterhill
Aberdeen AB25 2ZD
- School/Department
- School of Medicine, Medical Sciences and Nutrition
Biography
Petra Louis is a molecular microbiologist with an interest in the human gut microbiota, diet and health. She obtained her Diploma in Biology and PhD in Microbiology from the University of Bonn, Germany, where she conducted research on osmoadaptation in halophilic bacteria. She undertook post-doctoral research at the University of Aberdeen on stress responses in Escherichia coli and on RNA secondary structure melting during translation in yeast, before taking up a position as principal investigator at the Rowett Institute in Aberdeen in 2002.
Her research concentrates on the metabolism of the microbial community that inhabits the human intestine and how it can be modulated by diet to improve human health, with a particular emphasis on short-chain fatty acid production from dietary non-digestible carbohydrates. She utilises a wide range of technical approaches, including strictly anaerobic microbiology, molecular microbial community analysis, -omics technologies and mathematical modelling, to investigate which microbes are instrumental for primary fibre degradation and how different microbial community members interact with each other during fibre breakdown and fermentation product formation. Her work contributes to the development of effective and personalised nutritional strategies to improve human health via actions of the gut microbiota.
Qualifications
- Diploma Biology1992 - University of Bonn, Germany
- PhD Microbiology1996 - Univesity of Bonn, Germany
Prizes and Awards
PhD thesis award of the German Society for General and Applied Microbiology (VAAM) 1996
Clarivate (Web of Science) highly cited researcher: 2018-2023
Member of the Rowett Gut Microbiology Group, who were runners up in the International Global Grants for Gut Health Nature Awards Research Group Prize 2023 - read more HERE
- Research
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Research Overview
The microbial community in the human large intestine consists of a diverse range of bacteria that break down complex nutrients of dietary and host origin. The members of this ecosystem form a complex metabolic network in which the product of one group can serve as substrate for another group. Overall, this leads to the accumulation of mainly three organic acids, acetate, propionate and butyrate, which are partially absorbed by the colon and serve as an additional energy source for the human host. Butyrate is of special interest, as it serves as the preferred energy source for the colonic wall and thus contributes to the proper functioning of the gut. It has also been claimed to be protective against colon cancer and inflammatory bowel disease through effects on host gene expression and cellular development of the colon. Propionate also influences host physiology and its potential effects on host satiety is of particular interest in view of the current obesity epidemic.
Dietary intakes can influence the microbial gut community and shift the balance between different functional bacterial groups, with potential consequences for host health. Our research concentrates on the microbial metabolism of dietary non-digestible carbohydrates, with a particular emphasis on short-chain fatty acid production. We utilise are wide range of technical approaches, including strictly anaerobic microbiology of pure strains and mixed microbial consortia, molecular microbial community analysis of in vitro and human dietary studies, -omics technologies, enzymology and mathematical modelling.
Research Specialisms
- Microbiology
- Biochemistry
- Molecular Biology
- Ecology
Our research specialisms are based on the Higher Education Classification of Subjects (HECoS) which is HESA open data, published under the Creative Commons Attribution 4.0 International licence.
- Publications
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Page 3 of 5 Results 51 to 75 of 108
Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota (“Ruminococcus bicirculans”) reveals two chromosomes and a selective capacity to utilize plant glucans
Environmental Microbiology, vol. 16, no. 9, pp. 2879-2890Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/1462-2920.12217
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
The ISME Journal, vol. 8, no. 6, pp. 1323-1335Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/ismej.2014.48
- [ONLINE] View publication in Scopus
Phylogeny, culturing, and metagenomics of the human gut microbiota
Trends in Microbiology, vol. 22, no. 5, pp. 267-274Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.1016/j.tim.2014.03.001
The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing
PloS ONE, vol. 9, no. 2, e88982Contributions to Journals: ArticlesFaecal microbiota profiling in human volunteers on low and high fruit and vegetable intakes
ROWETT-INRA 2014 Gut Microbiology: From Sequence to Function. [P131] Rowett Institute of Nutrition and Health pp. 116, 1 page.Chapters in Books, Reports and Conference Proceedings: Other ContributionsFunctional metagenomics of human intestinal microbiome β-glucuronidase activity
Encyclopedia of Metagenomics. Nelson, K. E. (ed.). Springer, pp. 1-8, 8 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1007/978-1-4614-6418-1_749-1
Gut microbiome and obesity
Treatment of the obese patient. Kushner, R. F., Bessesen, D. H. (eds.). 2nd edition. Springer Science+Business Media, pp. 73-82, 10 pagesChapters in Books, Reports and Conference Proceedings: ChaptersSATIN (Satiety Innovation) Project:: Impact of type 3 resistant starch on gut microbiota and metabolites in overweight human volunteers
ROWETT-INRA 2014 Gut Microbiology: From Sequence to Function. [P143] Rowett Institute of Nutrition and Health pp. 122-122, 1 page.Chapters in Books, Reports and Conference Proceedings: Other ContributionsIntestinal colonization: how key microbial players become established in this dynamic process
BioEssays, vol. 35, no. 10, pp. 913-923Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.1002/bies.201300073
How our gut microbes influence our behaviour
Journal of Neuroendocrinology, vol. 25, no. 5, pp. 517-518Contributions to Journals: Letters- [ONLINE] DOI: https://doi.org/10.1111/jne.12027
Some are more equal than others: the role of ‘keystone’ species in the degradation of recalcitrant substrates
Gut Microbes, vol. 4, no. 3, pp. 236-240Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.4161/gmic.23998
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/5762/1/Some_are_more_equal_than_others.pdf
- [ONLINE] View publication in Scopus
Microbiota of De-Novo Pediatric IBD: Increased Faecalibacterium Prausnitzii and Reduced Bacterial Diversity in Crohn's But Not in Ulcerative Colitis
American journal of gastroenterology, vol. 107, no. 12, pp. 1913-1922Contributions to Journals: ArticlesDietary modulation of the human gut microbiota
AGRO Food Industry Hi-Tech, vol. 23, no. 6, pp. 26-28Contributions to Journals: Literature ReviewsThe role of the gut microbiota in nutrition and health
Nature Reviews Gastroenterology & Hepatology, vol. 9, no. 10, pp. 577-589Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.1038/nrgastro.2012.156
Does the human gut microbiota contribute to the etiology of autism spectrum disorders?
Digestive Diseases and Sciences, vol. 57, no. 8, pp. 1987-1989Contributions to Journals: Editorials- [ONLINE] DOI: https://doi.org/10.1007/s10620-012-2286-1
Microbial degradation of complex carbohydrates in the gut
Gut Microbes, vol. 3, no. 4, pp. 289-306Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.4161/gmic.19897
Phylogenetic distribution of genes encoding β-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities
Environmental Microbiology, vol. 14, no. 8, pp. 1876-1887Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1462-2920.2012.02711.x
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
The ISME Journal, vol. 6, no. 8, pp. 1535-1543Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/ismej.2012.4
Nutritional influences on the gut microbiota and the consequences for gastrointestinal health
The Biochemical society special interest meeting, pp. 1073-1078Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.1042/BST0391073
Micro-organisms in the human gut: diversity and function
biochemical society focussed meeting, pp. 4-9Contributions to Journals: Literature ReviewsButyrate production in phylogenetically diverse Firmicutes isolated from the chicken caecum
Microbial Biotechnology, vol. 4, no. 4, pp. 503-512Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1751-7915.2010.00244.x
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
The ISME Journal, vol. 5, no. 2, pp. 220-230Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/ismej.2010.118
Impact of Intestinal Microbial Communities upon Health
Beneficial microorganisms in multicellular life forms. Rosenberg, E., Gophna, U. (eds.). Springer-Verlag, pp. 243-252, 252 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1007/978-3-642-21680-0_18
Life in the gut: microbial responses to stress in the gastrointestinal tract
Science Progress, vol. 93, no. 1, pp. 7-36Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.3184/003685009X12605525292307
Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease
Journal of Medical Microbiology, vol. 59, no. 2, pp. 141-143Contributions to Journals: Editorials- [ONLINE] DOI: https://doi.org/10.1099/jmm.0.017541-0