Professor Berndt Muller

Emeritus Professor

About

Email Address: b.mueller@abdn.ac.uk
School/Department: School of Medicine, Medical Sciences and Nutrition

ORCiD

Personal Website

Scopus

Latest Publications

A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs
2024 - Published
Eijlers, P., Al-Khafaji, M. I., Soto Martin, E., Fasimoye, R. Y., Stead, D., Wenzel, M., Muller, B., Pettitt, J.
Nucleic Acids Research, vol. 52, no. 12, pp. 7245-7260
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkae321
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/23650/1/Elijlers_etal_NAR_A_nematode_specific_VoR.pdf
- [ONLINE] https://abdn.elsevierpure.com/en/publications/e59362a0-614f-44fe-ad5f-48014c57ed36
CMTr mediated 2`-O-ribose methylation status of cap adjacent-nucleotides across animals
2022 - Published
Dix, T. C., Haussmann, I. U., Brivio, S., Nallasivan, M. P., Hadzhiev, Y., Müller, F., Müller, B. M., Pettitt, J., Soller, M.
RNA , vol. 28, no. 10, pp. 1377-1390
Contributions to Journals: Articles
- [ONLINE] http://www.rnajournal.org/cgi/doi/10.1261/rna.079317.122.
- [ONLINE] DOI: https://doi.org/10.1261/rna.079317.122
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/19253/1/Dix_etal_CMTr_mediated_2_Oribose_VOR.pdf
- [ONLINE] View publication in Scopus
A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex
2022 - Published
Fasimoye, R. Y., Spencer, R. E., Soto Martin, E., Eijlers, P., Elmassoudi, H., Brivio, S., Mangana, C., Sabele, V., Rechtorikova, R., Wenzel, M., Connolly, B., Pettitt, J., Müller, B. M.
Nucleic Acids Research, vol. 50, no. 13, pp. 7591-7607
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkac534
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/19232/1/Fasimoye_etal_NAR_Novel_Essential_TRans_Splicing_VOR.pdf
- [ONLINE] https://abdn.elsevierpure.com/en/publications/2cee4001-b246-4b07-8fc5-8c910fe6ca1d
A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor
2022 - Published
Khatib, T., Müller, B. M., McCaffery, P.
Bioluminescence: Methods and Protocols, Volume 1. Kim, S. (ed.). 4 edition. Humana Press, pp. 197-207, 11 pages
Chapters in Books, Reports and Conference Proceedings: Chapters (Peer-Reviewed)
- [ONLINE] DOI: https://doi.org/10.1007/978-1-0716-2453-1_15
SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
2021 - Published
Wenzel, M., Muller, B., Pettitt, J.
BMC Bioinformatics, vol. 22, 140
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1186/s12859-021-04009-7
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/16101/1/Wenzel_etal_SLIDR_and_SLOPPR_VOR.pdf

View My Publications

Publications

Page 1 of 3 Results 1 to 25 of 54

A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs
2024 - Published
Eijlers, P., Al-Khafaji, M. I., Soto Martin, E., Fasimoye, R. Y., Stead, D., Wenzel, M., Muller, B., Pettitt, J.
Nucleic Acids Research, vol. 52, no. 12, pp. 7245-7260
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkae321
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/23650/1/Elijlers_etal_NAR_A_nematode_specific_VoR.pdf
- [ONLINE] https://abdn.elsevierpure.com/en/publications/e59362a0-614f-44fe-ad5f-48014c57ed36
CMTr mediated 2`-O-ribose methylation status of cap adjacent-nucleotides across animals
2022 - Published
Dix, T. C., Haussmann, I. U., Brivio, S., Nallasivan, M. P., Hadzhiev, Y., Müller, F., Müller, B. M., Pettitt, J., Soller, M.
RNA , vol. 28, no. 10, pp. 1377-1390
Contributions to Journals: Articles
- [ONLINE] http://www.rnajournal.org/cgi/doi/10.1261/rna.079317.122.
- [ONLINE] DOI: https://doi.org/10.1261/rna.079317.122
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/19253/1/Dix_etal_CMTr_mediated_2_Oribose_VOR.pdf
- [ONLINE] View publication in Scopus
A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex
2022 - Published
Fasimoye, R. Y., Spencer, R. E., Soto Martin, E., Eijlers, P., Elmassoudi, H., Brivio, S., Mangana, C., Sabele, V., Rechtorikova, R., Wenzel, M., Connolly, B., Pettitt, J., Müller, B. M.
Nucleic Acids Research, vol. 50, no. 13, pp. 7591-7607
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkac534
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/19232/1/Fasimoye_etal_NAR_Novel_Essential_TRans_Splicing_VOR.pdf
- [ONLINE] https://abdn.elsevierpure.com/en/publications/2cee4001-b246-4b07-8fc5-8c910fe6ca1d
A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor
2022 - Published
Khatib, T., Müller, B. M., McCaffery, P.
Bioluminescence: Methods and Protocols, Volume 1. Kim, S. (ed.). 4 edition. Humana Press, pp. 197-207, 11 pages
Chapters in Books, Reports and Conference Proceedings: Chapters (Peer-Reviewed)
- [ONLINE] DOI: https://doi.org/10.1007/978-1-0716-2453-1_15
SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
2021 - Published
Wenzel, M., Muller, B., Pettitt, J.
BMC Bioinformatics, vol. 22, 140
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1186/s12859-021-04009-7
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/16101/1/Wenzel_etal_SLIDR_and_SLOPPR_VOR.pdf
SLIDR and SLOPPR:: Flexible identification of spliced leadertrans-splicing and prediction of eukaryotic operons from RNA-Seq data
2020 - Published
Wenzel, M. A., Müller, B., Pettitt, J.
Working Papers: Preprint Papers
- [ONLINE] DOI: https://doi.org/10.1101/2020.12.23.423594
Resolution of polycistronic RNA by SL2 trans-splicing is a widely-conserved nematode trait
2020 - Published
Wenzel, M., Johnston, C. S., Müller, B. M., Pettitt, J., Connolly, B.
RNA , vol. 26, no. 12, pp. 1891-1904
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1261/rna.076414.120
- [ONLINE] View publication in Scopus
Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome
2020 - Published
Wenzel, M., Johnston, C., Müller, B., Pettitt, J., Connolly, B.
bioRxiv
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1101/642082
- [ONLINE] http://biorxiv.org/cgi/content/short/642082v1?rss=1
- [ONLINE] View publication in Mendeley
A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor
2019 - Published
Khatib, T., Whiting, A., Chisholm, D. R., Redfern, C., Muller, B., McCaffery, P.
Molecular Neurobiology, vol. 56, no. 10, pp. 7074-7084
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1007/s12035-019-1571-9
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/13053/1/Khatib2019_Article_ABioluminescenceReporterAssayF_VOR.pdf
- [ONLINE] View publication in Mendeley
- [ONLINE] https://abdn.pure.elsevier.com/en/en/researchoutput/a-bioluminescence-reporter-assay-for-retinoic-acid-control-of-translation-of-the-glur1-subunit-of-the-ampa-glutamate-receptor(a78ef07e-56a4-4bc5-975f-012dfb9e5cf5).html
- [ONLINE] View publication in Scopus
A high-throughput screen for the identification of compounds that inhibit nematode gene expression by targeting spliced leader trans-splicing
2019 - Published
Pandarakalam, G. C., Speake, M., McElroy, S., Alturkistani, A., Philippe, L., Pettitt, J., Muller, B., Connolly, B.
International Journal for Parasitology: Drugs and Drug Resistance, vol. 10, pp. 28-37
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.ijpddr.2019.04.001
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/12209/1/A_high_throughput_screen_for_the_identification_of_compounds_that_inhibit_nematode_gene_expression_by_targeting_spliced_leader_trans_splicing.pdf
- [ONLINE] View publication in Scopus
- [ONLINE] View publication in Mendeley
An in vivo genetic screen for genes involved in spliced leader trans-splicing indicates a crucial role for continuous de novo spliced leader RNP assembly
2017 - Published
Philippe, L., Pandarakalam, G. C., Fasimoye, R., Harrison, N., Connolly, B., Pettitt, J., Muller, B.
Nucleic Acids Research, vol. 45, no. 14, pp. 8474-8483
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkx500
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8751/3/An_in_vivo_genetic_screen_for_genes_involved_in_spliced_leader_trans_splicing_indicates_a_crucial_role_for_continuous_de_novo_spliced_leader_RNP_assembly.pdf
- [ONLINE] https://abdn.elsevierpure.com/en/publications/5c833370-19ee-4f43-a89f-287b19833814
Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication
2016 - Published
Christopher, A., Hameister, H., Corrigall, H., Ebenhoeh, O., Muller, B., Ullner, E.
PloS ONE, vol. 11, no. 10, e0165848
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0165848
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/7628/1/journal.pone.0165848.PDF
Mutation of genes controlling mRNA metabolism and protein synthesis predisposes to neurodevelopmental disorders
2015 - Published
Sartor, F., Anderson, J., McCaig, C., Miedzybrodzka, Z., Müller, B.
Biochemical Society Transactions, vol. 43, no. 6, pp. 1259-1265
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1042/BST20150168
- [ONLINE] https://abdn.elsevierpure.com/en/publications/fa7d0c1d-6c12-4901-ba78-09976c8197e9
Full UPF3B function is critical for neuronal differentiation of neural stem cells
2015 - Published
Alrahbeni, T., Sartor, F., Anderson, J., Miedzybrodzka, Z., McCaig, C., Muller, B.
Molecular brain, vol. 8, 33
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1186/s13041-015-0122-1
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/4555/1/s13041_015_0122_1.pdf
Operons Are a Conserved Feature of Nematode Genomes
2014 - Published
Pettitt, J., Philippe, L., Sarkar, D., Johnston, C., Gothe, H., Massie, D., Connolly, B., Muller, B.
Genetics, vol. 197, no. 4, pp. 1201-1211
Contributions to Journals: Articles
- [ONLINE] http://www.genetics.org/content/197/4/1201.full
- [ONLINE] DOI: https://doi.org/10.1534/genetics.114.162875
Replication stress-induced alternative mRNA splicing alters properties of the histone RNA-binding protein HBP/SLBP: a key factor in the control of histone gene expression
2013 - Published
Rattray, A. M. J., Nicholson, P., Muller, B.
Bioscience Reports, vol. 33, no. 5, e00066
Contributions to Journals: Articles
- [ONLINE] https://portlandpress.com/bioscirep/article/33/5/e00066/56128/Replication-stress-induced-alternative-mRNA
- [ONLINE] DOI: https://doi.org/10.1042/BSR20130074
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3389/1/Replication_stress_induced_alternative_mRNA_splicing_.pdf
The control of histone gene expression
2012 - Published
Rattray, A. M., Muller, B. M.
Biochemical Society Transactions, vol. 40, no. 4, pp. 880-885
Contributions to Journals: Literature Reviews
- [ONLINE] http://www.biochemsoctrans.org/bst/040/0880/bst0400880.htm
- [ONLINE] DOI: https://doi.org/10.1042/BST20120065
SL2-like spliced leader RNAs in the basal nematode Prionchulus punctatus: new insight into the evolution of nematode SL2 RNAs
2010 - Published
Harrison, N., Kalbfleisch, A., Connolly, B., Pettitt, J., Muller, B.
RNA , vol. 16, no. 8, pp. 1500-1507
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1261/rna.2155010
The evolution of spliced leader trans-splicing in nematodes
2010 - Published
Pettitt, J., Harrison, N., Stansfield, I., Connolly, B., Müller, B.
Biochemical Society Transactions, vol. 38, no. 4, pp. 1125-1130
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1042/BST0381125
Deregulation of EIF4E: a novel mechanism for autism
2009 - Published
Neves-Pereira, M., Muller, B., Massie, D., Williams, J. H. G., O'Brien, P. C. M., Hughes, A., Shen, S., St Clair, D., Miedzybrodzka, Z.
Journal of Medical Genetics, vol. 46, no. 11, pp. 759-765
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1136/jmg.2009.066852
Treatment and Diagnosis of Behavioural Disorders
2009 - Published
Miedzybrodzka, Z. H., St Clair, D. M., Muller, B., Neves-Pereira, M. D. L., Massie, D.
Patents: Patents
- [ONLINE] http://www.google.com/patents/WO2009144480A1?cl=en
Post-transcriptional control of animal histone gene expression: not so different after all...
2008 - Published
Nicholson, P., Muller, B. M.
Molecular BioSystems, vol. 4, no. 7, pp. 721-725
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1039/b802133c
Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders
2008 - Published
Pettitt, J., Muller, B. M., Stansfield, I., Connolly, B.
RNA , vol. 14, no. 4, pp. 760-770
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1261/rna.948008
DNA-activated protein kinase functions in a newly observed S phase checkpoint that links histone mRNA abundance with DNA replication
2007 - Published
Muller, B. M., Blackburn, J., Feijoo, C., Zhao, X., Smythe, C.
Journal of Cell Biology, vol. 179, no. 7, pp. 1385-1398
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1083/JCB.200708106
Histone gene expression and histone mRNA 3' end structure in Caenorhabditis elegans
2007 - Published
Keall, R., Whitelaw, S., Pettitt, J., Muller, B.
BMC Molecular Biology, vol. 8, 51
Contributions to Journals: Articles
- [ONLINE] http://www.biomedcentral.com/1471-2199/8/51
- [ONLINE] DOI: https://doi.org/10.1186/1471-2199-8-51
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3874/1/Histone_gene_expression.pdf

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Latest Publications

A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs

CMTr mediated 2`-O-ribose methylation status of cap adjacent-nucleotides across animals

A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex

A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor

SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data

A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs

CMTr mediated 2`-O-ribose methylation status of cap adjacent-nucleotides across animals

A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex

A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor

SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data

SLIDR and SLOPPR:: Flexible identification of spliced leadertrans-splicing and prediction of eukaryotic operons from RNA-Seq data

Resolution of polycistronic RNA by SL2 trans-splicing is a widely-conserved nematode trait

Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome

A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor

A high-throughput screen for the identification of compounds that inhibit nematode gene expression by targeting spliced leader trans-splicing

An in vivo genetic screen for genes involved in spliced leader trans-splicing indicates a crucial role for continuous de novo spliced leader RNP assembly

Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication

Mutation of genes controlling mRNA metabolism and protein synthesis predisposes to neurodevelopmental disorders

Full UPF3B function is critical for neuronal differentiation of neural stem cells

Operons Are a Conserved Feature of Nematode Genomes

Replication stress-induced alternative mRNA splicing alters properties of the histone RNA-binding protein HBP/SLBP: a key factor in the control of histone gene expression

The control of histone gene expression

SL2-like spliced leader RNAs in the basal nematode Prionchulus punctatus: new insight into the evolution of nematode SL2 RNAs

The evolution of spliced leader trans-splicing in nematodes

Deregulation of EIF4E: a novel mechanism for autism

Treatment and Diagnosis of Behavioural Disorders

Post-transcriptional control of animal histone gene expression: not so different after all...

Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders

DNA-activated protein kinase functions in a newly observed S phase checkpoint that links histone mRNA abundance with DNA replication

Histone gene expression and histone mRNA 3' end structure in Caenorhabditis elegans

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Chapters in Books, Reports and Conference Proceedings

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