Dr Alessandro De Moura

Dr Alessandro De Moura
Dr Alessandro De Moura
Dr Alessandro De Moura

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About

Biography

Lecturer in Physics. Dr de Moura holds a PhD in Physics from Universidade Estadual de Campinas, Brazil.

Dr Moura has a background in dynamical systems and statistical physics. His research interests in these areas include transient chaos, nonhyperbolic chaotic scattering, and chaotic advection of flows. Since moving to Aberdeen, he has been applying physics and mathematics to understand fundamental biological processes, in collaborations with biologists in Aberdeen and elsewhere. Biological problems he is actively working on include: mathematical modelling of DNA replication, dynamics and regulation of protein synthesis in uni-cellular organisms, modelling the responses of pathogenic fungi species to combinations of stresses, homeostasis of bacteria, macromolecular dynamics in cellular membranes.

Publications

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  • Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

    Fernandes, L. D., Moura, A. P., Ciandrini, L.
    Scientific Reports, vol. 7, 17409
    Contributions to Journals: Articles
  • Cooperative response and clustering: Consequences of membrane-mediated interactions among mechanosensitive channels

    Fernandes, L. D., Guseva, K., De Moura, A. P.
    Physical Review E, vol. 96, no. 2, 022410
    Contributions to Journals: Articles
  • Frontiers of chaotic advection

    Aref, H., Blake, J. R., Budišić, M., Cardoso, S. S., Cartwright, J. H., Clercx, H. J., El Omari, K., Feudel, U., Golestanian, R., Gouillart, E., Van Heijst, G. F., Krasnopolskaya, T. S., Le Guer, Y., MacKay, R. S., Meleshko, V. V., Metcalfe, G., Mezić, I., De Moura, A. P., Piro, O., Speetjens, M. F., Sturman, R., Thiffeault, J. L., Tuval, I.
    Reviews of Modern Physics, vol. 89, no. 2, 025007
    Contributions to Journals: Articles
  • Brief isoflurane anaesthesia affects differential gene expression, gene ontology and gene networks in rat brain

    Lowes, D. A., Galley, H. F., Moura, A. P. S., Webster, N. R.
    Behavioural Brain Research, vol. 317, pp. 453-460
    Contributions to Journals: Articles
  • Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach

    Delgado-SanMartin, J. A., Hare, J. I., de Moura, A. P. S., Yates, J. W. T., Wang, E. (ed.)
    PLoS Computational Biology , vol. 11, no. 10, e1004550
    Contributions to Journals: Articles
  • Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

    Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P., Romano, M. C.
    PloS ONE, vol. 10, no. 9, 0137750
    Contributions to Journals: Articles
  • Diffusion in randomly perturbed dissipative dynamics

    Rodrigues, C. S., Chechkin, A. V., Moura, A. P. S. d., Grebogi, C., Klages, R.
    Europhysics Letters, vol. 108, no. 4, 40002
    Contributions to Journals: Articles
  • Strange eigenmodes and chaotic advection in open fluid flows

    De Moura, A. P. S.
    Europhysics Letters, vol. 106, no. 3, 34002
    Contributions to Journals: Articles
  • The dynamics of genome replication using deep sequencing

    Müller, C. A., Hawkins, M., Retkute, R., Malla, S., Wilson, R., Blythe, M. J., Nakato, R., Komata, M., Shirahige, K., de Moura, A. P. S., Nieduszynski, C. A.
    Nucleic Acids Research, vol. 42, no. 1, e3
    Contributions to Journals: Articles
  • Dynamical Collapse of Trajectories Part I: Homoclinic Tangles in Systems with Dry Friction

    Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N., Nijmeijer, H.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
  • Dynamical Collapse of Trajectories Part II: Limit Set of a Horseshoe-like Map

    Biemond, J. J. B., Moura, A. P., Grebogi, C., van de Wouw, N., Nijmeijer, H.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
  • The role of asymmetries in rock-paper-scissors biodiversity models

    Timpanaro, A. M., Grebogi, C., de Moura, A. P. S.
    XXXVI Encontro Nacional de Física da Matéria Condensada
    Contributions to Conferences: Abstracts
  • High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination

    Hawkins, M., Retkute, R., Müller, C. A., Saner, N., Tanaka, T. U., de Moura, A. P. S., Nieduszynski, C. A.
    Cell Reports, vol. 5, no. 4, pp. 1132-1141
    Contributions to Journals: Articles
  • Stochastic association of neighboring replicons creates replication factories in budding yeast

    Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S., Tanaka, T. U.
    Journal of Cell Biology, vol. 202, no. 7, pp. 1001-1012
    Contributions to Journals: Articles
  • Integrated stress response of Escherichia coli to methylglyoxal: transcriptional readthrough from the nemRA operon enhances protection through increased expression of glyoxalase I

    Ozyamak, E., de Almeida, C., de Moura, A. P. S., Miller, S., Booth, I. R.
    Molecular Microbiology, vol. 88, no. 5, pp. 936-950
    Contributions to Journals: Articles
  • Effects of bounded random perturbations on discrete dynamical systems

    Rodrigues, C. S., de Moura, A. P. S., Grebogi, C.
    Bounded noises in physics, biology and engineering. d'Onofrio, A. (ed.). Birkhäuser, pp. 151-168, 17 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters
  • Combinatorial stresses kill pathogenic Candida species

    Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E., Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K., Brown, A. J. P.
    Medical Mycology, vol. 50, no. 7, pp. 699-709
    Contributions to Journals: Articles
  • Impact of combinatorial stresses upon Candida albicans

    Kaloriti, D., Tillmann, A., Jacobsen, M., Yin, Z., Patterson, M., Radmaneshfar, E., You, T., Chandrasekaran, K., Pang, W., Coghill, G., de Moura, A. P. S., Thiel, M., Romano, M. C., Grebogi, C., Haynes, K., Quinn, J., Gow, N. A. R., Brown, A. J. P.
    Mycoses, vol. 55, no. Suppl. 4, pp. 15
    Contributions to Journals: Abstracts
  • A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

    You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J., Brown, A. J. P.
    BMC Research Notes, vol. 5, 258
    Contributions to Journals: Articles
  • Dynamical collapse of trajectories

    Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N., Nijmeijer, H.
    Europhysics Letters, vol. 98, no. 2, 20001
    Contributions to Journals: Articles
  • Are the fractal skeletons the explanation for the narrowing of arteries due to cell trapping in a disturbed blood flow?

    Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N., Grebogi, C.
    Computers in Biology and Medicine, vol. 42, no. 3, pp. 276-281
    Contributions to Journals: Articles
  • Optimal placement of origins for DNA replication

    Karschau, J., Blow, J. J., de Moura, A. P. S.
    Physical Review Letters, vol. 108, no. 5, 058101
    Contributions to Journals: Articles
  • Optimality in DNA repair

    Richard, M. C., Fryett, M., Miller, S., Booth, I., Grebogi, C., Moura, A.
    Journal of Theoretical Biology, vol. 292, pp. 39-43
    Contributions to Journals: Articles
  • Mixing and Chaos in Open Flows

    de Moura, A. P. S., Feudel, U., Gouillart, E.
    Advances in Applied Mechanics. van der Giessen, E., Aref, H., Clercx, H., Speetjens, M. (eds.). Elsevier, pp. 1-50, 50 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters
  • Reacting particles in open chaotic flows

    de Moura, A. P. S.
    Physical Review Letters, vol. 107, no. 27, 274501
    Contributions to Journals: Articles
  • Nonlinear dynamics: a brief introduction

    de Moura, A. P. S., Grebogi, C.
    Handbook of Statistical Systems Biology. Stumpf, M., Girolami, M., Balding, D. (eds.). Wiley-Blackwell, pp. 331-338
    Chapters in Books, Reports and Conference Proceedings: Chapters
  • Dynamics of DNA replication in yeast

    Retkute, R., Nieduszynski, C., de Moura, A.
    Physical Review Letters, vol. 107, no. 6, 068103
    Contributions to Journals: Articles
  • A matter of life or death: modeling DNA damage and repair in bacteria

    Karschau, J., de Almeida, C., Richard, M. C., Miller, S., Booth, I. R., Grebogi, C., de Moura, A. P. S.
    Biophysical Journal, vol. 100, no. 4, pp. 814-821
    Contributions to Journals: Articles
  • Collective response of self-organized clusters of mechanosensitive channels

    Guseva, K., Thiel, M., Miller, S., Grebogi, C., de Moura, A. P. S., Booth, I.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 83, no. 2, 020901(R)
    Contributions to Journals: Articles
  • Dynamics: A Brief Introduction

    Moura, A., Grebogi, C.
    Handbook of Statistical Systems Biology. Stumpf, M., Balding, D. J., Girolami, M. (eds.). Wiley
    Chapters in Books, Reports and Conference Proceedings: Chapters
  • Fractal structures in stenoses and aneurysms in blood vessels

    Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N. A., Grebogi, C.
    Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences, vol. 368, no. 1933, pp. 5605-5617
    Contributions to Journals: Articles
  • Introduction to Focus Issue: Dynamics in Systems Biology

    Brackley, C. A., Ebenhoeh, O., Grebogi, C., Kurths, J., de Moura, A., Romano, M. C., Thiel, M.
    Chaos, vol. 20, no. 4, 045101
    Contributions to Journals: Articles
  • Escape from attracting sets in randomly perturbed systems

    Rodrigues, C. S., Grebogi, C., de Moura, A. P. S.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 82, no. 4, 046217
    Contributions to Journals: Articles
  • Mathematical modelling of whole chromosome replication

    de Moura, A. P. S., Retkute, R., Hawkins, M., Nieduszynski, C. A.
    Nucleic Acids Research, vol. 38, no. 17, pp. 5623-5633
    Contributions to Journals: Articles
  • Random fluctuation leads to forbidden escape of particles

    Rodrigues, C., de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 82, no. 2, 026211
    Contributions to Journals: Articles
  • Global and local depletion of ternary complex limits translational elongation

    Zhang, G., Fedyunin, I., Miekley, O., Valleriani, A., de Moura, A. P. S., Ignatova, Z.
    Nucleic Acids Research, vol. 38, no. 14, pp. 4778-4787
    Contributions to Journals: Articles
  • Nonlinear Dynamics and Chaos: Advances and Perspectives

    Thiel, M. (ed.), Kurths, J. (ed.), Romano, M. C. (ed.), Karolyi, G. (ed.), de Moura, A. P. S. (ed.)
    Springer-Verlag, Dordrecht, Netherlands. 293 pages
    Books and Reports: Books
  • Dynamics of finite-size particles in chaotic fluid flows

    Cartwright, J., Feudel, U., Karolyi, G., de Moura, A. P. S., Piro, O., Tel, T.
    Nonlinear Dynamics and Chaos: Advances and Perspectives. Springer, pp. 51-89, 39 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters
  • Emerging attractors and the transition from dissipative to conservative dynamics

    Rodrigues, C. S., de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 80, no. 2, 026205
    Contributions to Journals: Articles
  • Chaotic advection in blood flow

    Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N. A., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 80, no. 1, 016213
    Contributions to Journals: Articles
  • Chaos and nonlinear dynamics: Advances and perspectives

    Karolyi, G., de Moura, A., Romano, M. C., Thiel, M., Kurths, J.
    The European Physical Journal. Special Topics, vol. 165, no. 1, pp. 1-4
    Contributions to Journals: Editorials
  • Finite-size particles, advection, and chaos: A collective phenomenon of intermittent bursting (vol 78, art no 056206, 2008): Publisher's Note

    Medrano-T, R. O., Moura, A., Tel, T., Caldas, I. L., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 6, 069901
    Contributions to Journals: Articles
  • Finite-size particles, advection, and chaos: a collective phenomenon of intermittent bursting

    Medrano-T, R. O., Moura, A. P. S., Tel, T., Caldas, I. L., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 5, 056206
    Contributions to Journals: Articles
  • Transition to chaotic scattering: Signatures in the differential cross section

    Schelin, A., de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 4 , 046204
    Contributions to Journals: Articles
  • Onset of chaotic advection in open flows

    Biemond, J. J. B., Moura, A. P. S., Karolyi, G., Grebogi, C., Nijmeijer, H.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 1, 016317
    Contributions to Journals: Articles
  • Strange nonchaotic repellers

    de Moura, A. P. S.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 76, no. 3, 036218
    Contributions to Journals: Articles
  • Signatures of fractal clustering of aerosols advected under gravity

    Vilela, R. D., Tél, T., de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 75, no. 6, 065203(R)
    Contributions to Journals: Articles
  • Traffic of particles in complex networks

    Germano, A., de Moura, A. P. S.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 74, no. 3 Part 2, 036117
    Contributions to Journals: Articles
  • Finite-size effects on open chaotic advection

    Vilela, R. D., de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 73, no. 2, 026302
    Contributions to Journals: Articles
  • Thin Watts-Strogatz networks

    de Moura, A. P. S.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 73, no. 1 part 2, 016110
    Contributions to Journals: Articles
  • Chemical and biological activity in open flows: a dynamical system approach (vol 413, pg 91, 2005)

    Tel, T., de Moura, A., Grebogi, C., Karolyi, G.
    Physics Reports, vol. 415, no. 5-6, pp. 360-360
    Contributions to Journals: Articles
  • Chemical and Biological Activity in Open Flows: A Dynamical System Approach

    Tel, T., Moura, A. P. S., Grebogi, C., Karolyi, G.
    Physics Reports, vol. 413, no. 2-3, pp. 91-196
    Contributions to Journals: Articles
  • Inducing Chaos by Resonant Perturbations: Theory and Experiment

    Lai, Y. C., Kandangath, A., Krishnamoorthy, S., Gaudet, J. A., de Moura, A. P. S., Lai, Y.
    Physical Review Letters, vol. 94, no. 21, 214101
    Contributions to Journals: Articles
  • Fermi-Dirac statistics and traffic in complex networks

    de Moura, A. P. S.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 71, no. 6 Part 2, 066114
    Contributions to Journals: Articles
  • Effective Dynamics in Hamiltonian Systems with Mixed Phase Space

    Motter, A. E., de Moura, A. P. S., Grebogi, C., Kantz, H.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 71, no. 3, 036215
    Contributions to Journals: Articles
  • Caos em Sistemas Dinamicos

    Moura, A. P. S., Grebogi, C.
    Fisica: Tendencias e Perspectivas, pp. 99-107, 8 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters
  • Reactions in Flows with Nonhyperbolic Dynamics

    de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 70, no. 3, 036216
    Contributions to Journals: Articles
  • Chemical and biological activity in three-dimensional flows

    de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 70, no. 2, 026218
    Contributions to Journals: Articles
  • Biased growth and the 'rich-get-richer' principle

    de Moura, A. P. S.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 69, no. 5 pt 2, 056116
    Contributions to Journals: Articles
  • Reactive particles in random flows

    Karolyi, G., Tel, T., de Moura, A. P. S., Grebogi, C.
    Physical Review Letters, vol. 92, no. 17, 174101
    Contributions to Journals: Articles
  • Chemical and Biological Activity in 3-dimensional Flows

    Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 70
    Contributions to Journals: Articles
  • Three-dimensional Effects in Active Chaotic Flows

    Moura, A. P. S., Grebogi, C.
    Contributions to Conferences: Other Contributions
  • Three-dimensional effects in active chaotic flows

    de Moura, A. P. S., Grebogi, C.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
  • Searching in small-world networks

    de Moura, A. P. S., Motter, A. E., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 68, no. 3, 036106
    Contributions to Journals: Articles
  • Signatures of small-world and scale-free properties in large computer programs

    de Moura, A. P. S., Lai, Y. C., Motter, A. E., Lai, Y.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 68, no. 1, 017102
    Contributions to Journals: Articles
  • Interference and interactions in open quantum dots

    Bird, J. P., Akis, R., Ferry, D. K., de Moura, A. P. S., Lai, Y. C., Indlekofer, K. M., Lai, Y.
    Reports on Progress in Physics, vol. 66, no. 4, pp. 583-632
    Contributions to Journals: Articles
  • Countable and Uncountable Boundaries in Chaotic Scattering

    de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 66, no. 4, 046214
    Contributions to Journals: Articles
  • Tunneling and Nonhyperbolicity in Quantum Dots

    de Moura, A. P. S., Lai, Y., Akis, R., Bird, J. P., Ferry, D. K.
    Physical Review Letters, vol. 88, no. 23, 236804
    Contributions to Journals: Articles
  • Rainbow Transition in Chaotic Scattering

    de Moura, A. P. S., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 65, no. 3, 035206
    Contributions to Journals: Articles
  • Output Functions and Fractal Dimensions in Dynamical Systems,

    Moura, A. P. S., Grebogi, C.
    Physical Review Letters, vol. 86, pp. 2778-2781
    Contributions to Journals: Articles
  • Topology of high-dimensional chaotic scattering

    Lai, Y. C., de Moura, A. P. S., Grebogi, C., Lai, Y.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 62, no. 5, pp. 6421-6428
    Contributions to Journals: Articles
  • Fractal escapes in Newtonian and relativistic multipole gravitational fields

    de Moura, A. P. S., Letelier, P. S.
    Physics Letters A, vol. 266, no. 4-6, pp. 309-320
    Contributions to Journals: Articles
  • Chaos and Fractals in Geodesic Motions Around a Non-Rotating Black-Hole with Halos

    de Moura, A. P. S., Letelier, P.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 61, no. 6506
    Contributions to Journals: Articles
  • Scattering map for two black holes

    de Moura, A. P. S., Letelier, P.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 62, no. 4784
    Contributions to Journals: Articles
  • Fractal basins in Henon-Heiles and other polynomial potentials

    de Moura, A. P. S., Letelier, P.
    Physics Letters A, vol. 256, no. 362
    Contributions to Journals: Articles

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