Variant Calling, Annotation and Association Analyses

Comprehensive service typically 6-26 weeks:

  1. QC of data.
  2. Alignment to reference:
    1. Good quality reference that is the same species/strain as your experimental samples.
    2. Reference is poor quality and/or is a different strain to the experimental samples.
  3. Variant calling and filtering.
  4. OPTIONAL: Variant effect prediction, variant annotation and refinement of candidates.
  5. OPTIONAL: Association analyses.
  6. Publication quality visualisation and reporting.
  7. Input to publication, including revisions and resubmissions.