Last update: Tursday 27 February 2003

WWW Links The following are various links relevant to the fields of Electrophoresis and Microbiology. If you know of any links that should be added to this list or any updates to those already included please contact Phil Cash - p.cash@abdn.ac.uk Page Index 2D Protein Databases and Related Links General sites listing 2D protein databases Microbial 2D Protein Databases 2D Protein Databases of higher organisms Laboratories involved in proteome analysis Proteome Databases Proteome databases derived using procedures other than 2DE COGEME Consortium for the Functional Genomics of Microbial Eukaryotes Mass Spectrometry   Analytical Tools Gel analyses Protein identification and characterisation Scientific Society Home Pages Electrophoresis Microbiology Microbial Genome Sites   Eukaryotic Genome Sites   Microbiology and Infectious Disease Sites Microbiology, Infectious Diseases and Culture Collections Parasitology Molecular Biology Sites   Biological Information  General sites of biological information Commercial Sites   2D Protein Databases and Related Links General sites listing 2D protein databases WORLD-2DPAGE. Federated 2-D PAGE databases. Electrophoresis Databases. Top Microbial 2D Protein Databases ECO2DBASE. Gene-Protein database of E. coli. SWISS-2DPAGE Includes analyses of E. coli Analysis of E. coli proteins by 2D-PAGE. Harvard University 2D protein index of Bacillus subtilis Protein Mapping Group at Argonne. Includes the analysis of Pyrococcus furiosus proteins by 2D-PAGE. Cyano2Dbase. 2D Protein mapping of Synechocystis sp. PCC6803. Siena-2DPAGE Analysis of Chlamydia trachomatis L2 proteins 2D PAGE Database. (Max Planck Institut für Infektionsbiologie) Proteome databases for Mycobaterium tuberculosis and Helicobacter pylori. Mycobacterium tuberculosis. Statens Serum Institut, Denmark Xylella fastidiosa 2D Databases. Laboratorio de Quimica de Proteinas - LAQUIP UNICAMP, SP, Brazil Top 2D Protein Databases of Higher Organisms YPD - Yeast Protein Database - Proteome Inc. Yeast 2D-PAGE Yeast Protein Map, Bordeaux COMPLUYEAST-2DPAGE - Saccharomyces cerevisiae and Candida albicans proteome databases 2-DE Gel Protein Databases at Harefield. Molecular Anatomy Laboratory, Purdue University - Various 2D protein profiles of mammalian tissues. WORLD-2DPAGE. Provides links to 2D databases of various cell types and body fluids TMIG-2DPAGE. Age-related protein database Biobase. Protein databases related to keratinocytes and bladder cancer. Protein databases for various cell types also included. UCSF 2D PAGE. Protein analyses of A375 Melanoma cells Chloroplast Proteome. Analysis of Maize by 2D-PAGE Maize Proteome and Genome Analysis. INRA, France Two-dimensional electrophoresis database. Analyses of the proteomes of Arabidopsis, Rice and Mouse Brain. 2D Protein Database of the Inner Ear - Washington University Arabidopsis seed proteome Top Laboratories involved in proteome analysis These are just a few of the many labs (Academic and Commercial) working in the area of proteomics. University of Tubingen Australian Proteome Analysis Facility Aberdeen Proteome Facility Center for Proteome Analysis - Odense University Protein 2D Group - Munich Europroteome Proteome Systems Ltd - Australia Center for Proteome Studies - University of Michigan Moredun Research Insitute Univeristy of Dundee - Wellcome Trust Biocentre University of Glasgow - The Sir Henry Wellcome Functional Genomics Facility University of Colarado Health Sciences Center Pride Proteomics Top Proteome Databases These are sites detailing predicted proteomes based on the analysis of genome sequencing data and may include structural predictions of the encoded proteins. Parasite Proteome Analysis - Data presented on Leishmania sp., Trypanosoma sp. and Palsmodium spp. Human Proteome / Structural Genomics Pilot Project - Brookhaven National Laboratory, The Rockefeller University and Albert Einstein College of Medicine Top COGEME Consortium for the Functional Genomics of Microbial Eukaryotes COGEME Web Site PRF1 - Proteome Facilities at the University of Aberdeen Top Mass Spectrometry spectroscopyNOW.com - link to the proteomics channel ProteinProspector. - University of California San Francisco. Tools for identifying proteins from MS derived data. Top Analytical Tools Gel analyses FLICKER - Gel comparisons across the WWW Protein identification and characterisation ExPASy - Various analytical tools for protein identification from sequence and 2D analyses ProteinProspector. - University of California San Francisco. Tools for identifying proteins from MS derived data. Top Scientific Society Home Pages British Society for Proteome Research (Formerly: British Electrophoresis Society) American Electrophoresis Society. French Electrophoresis Society German Electrophoresis Society Société Suisse d'Electrophorèse The Japanese Electrophoresis Society Home Page American Society for Microbiology American Society for Mass Spectrometry Top Microbial Genome Sequencing Sites General Sequencing Lists Microbial Genomes List of current and partial micorbial genome sequences. List maintained at NCBI and contains useful links to the sequence data. The Institute for Genomic Research. Includes genome sequences for various bacteria including H. influenzae. Magpie Genome Sequencing Project List - Provides information on the progress of genome sequencing projects. The Sanger Centre - Projects list BioCyc - Microbial pathway/genome databases. Haemophilus influenzae related sites Haemophilus influenzae - Sequence of Rd at TIGR GeneQuiz - Analysis of the Haemophilus influenza and other bacterial genomes HinCyc - Encyclopedia of Haemophilus influenzae genes and metabolism Haemophilus influenzae Reconstruction of Metabolism at PUMA H.influenzae Rd Genes - According to the KEGG metabolic pathway database Escherichia coli related sites EcoCyc: Encyclopedia of E. coli genes and metabolism. E. coli genome Center GenProtEC - A database of the E coli genome and proteome Mycoplasma pneumoniae related sites Mycoplasma pneumoniae complete genome sequence Mycobacterium tuberculosis related sites Mycobacterium Database (MycDB) Mycobacterium tuberculosis - Sequence data held at TIGR Mycobacterium tuberculosis - Complete genome sequence at The Sanger Centre Neisseria spp. related sites Neisseria meningitidis genome sequence - The Sanger Centre Neisseria gonorrhoeae genome sequence - University of Oklahoma Bacillus subtilis related sites NRSub - B. subtillis genome data - Lyons France SubtiList - Bacillus subtilis genome data - Paris, France BSORF - Bacillus subtilis genome data - Tokyo, Japan Streptococcus spp. related sites Streptococcus pyogenes - Sequence data from Sanger Centre Streptococcus pyogenes - Sequence data from University of Oklahoma Streptococcus pneumoniae - Unfinished sequence data available from TIGR Top Eukaryotic Genome Sequence Site Human - Links at Sanger Centre Dog - University of California, Berkley Goat - Institut National de la Recherche Agronomique, Laboratoire de Génétique Biochimique et de Cytogénétique de Jouy-en-Josas Top Microbiology and Infectious Disease Sites Microbiology, Infectious Diseases and Culture Collections Outbreak - Provides information on emerging infectious diseases (Requires password and User ID - Free Registration) World-Wide Web Virtual Library: Microbiology and Virology (Biosciences) Insitute for Molecular Virology. University of Wisconsin, Madison The Garry Lab Web Pages-WWW Virology Servers. Large list of sites of virological interest. (UK Mirror) Index Virum. An Index to ICTV approved Virus Families, Subfamilies, Genera and Species. Emerging Infectious Diseases. Journal published by CDC Infectious Disease News Communicable Disease Surveillance Centre (CDSC) World Health Organisation CDC & ATSDR Home Page The Medical Mycology Research Center United Kingdom National Culture Collection American Type Culture Collection ECACC - European Collection of Cell Cultures Microbes.info - Links to news stories on microbiology Parasitology Malaria Foundation International NCBI Malaria Genetics & Genomics - Index The Sanger Centre - Links to various sequencing projects on protozoal genomes Malaria Database Top Molecular Biology Sites ExPASy. Entrance to SWISS-PROT and related databases Searching GenBank Harvard Biological Laboratories - Genome Research The National Center for Biotechnology Information Genomics Resource. General information on Genomics, Proteomics and Bioinformatics mantained by Wiley Top Biological information biol.net. General site with links to a range of biological information Top Commercial Sites These companies provide services for electrophoresis and include links to other WWW sites relating to Electrophoresis and Molecular Biology. Nonlinear Dynamics. - 1D and 2D analysis software. Makers of the Phoretizx 2D software suite. TotalLab - Imaging software for 1D and 2D electrophoretic analyses and other biotech applications. Molecular Dynamics. - Scanners Genomic Solutions. -Sales of Investigator gel system (formerly from ESA Inc.) Amersham Pharmacia Biotech. - Equipment and materials for electrophoresis EABiotech. - Enhanced autoradiography technique. Applied Maths. - 1D analysis software Micromass - Mass Spectrometers and the Proteome Workstation Delta2D - Software for rapid differential analysis of 2D electrophoresis gels GenTech Scientific Inc. - Suppliers of reconditioned analytical equipment including LC, HPLC and MS systems. International Equipment Trading Ltd - Suppliers of refurbished analytical equipment including mass spectrometers Top